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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: HA-sp
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX190031
GSM945248: UW ChipSeq HA-sp Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Neural
Cell type
HA-sp
Tissue
spinal cord
Lineage
ectoderm
Description
astrocytes spinal cord
Attributes by original data submitter
Sample
source_name
HA-sp
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HA-sp
cell organism
human
cell description
astrocytes spinal cord
cell karyotype
normal
cell lineage
ectoderm
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000974
labexpid
DS16041
labversion
Bowtie 0.12.7
replicate
1
Sequenced DNA Library
library_name
GSM945248: UW_ChipSeq_HA-sp_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
32808569
Reads aligned (%)
98.4
Duplicates removed (%)
1.9
Number of peaks
1043 (qval < 1E-05)
hg19
Number of total reads
32808569
Reads aligned (%)
97.3
Duplicates removed (%)
3.2
Number of peaks
1173 (qval < 1E-05)
Base call quality data from
DBCLS SRA