SRX190022
GSM945239: UW ChipSeq HFF-Myc H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Epidermis
Cell type
HFF-Myc
Tissue
foreskin
Lineage
fibroblast
Description
foreskin fibroblast cells expressing canine cMyc

Attributes by original data submitter

Sample

source_name
HFF-Myc
biomaterial_provider
Dr. Torok-Storb, FHCRC
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HFF-Myc
cell organism
human
cell description
foreskin fibroblast cells expressing canine cMyc
cell karyotype
normal
cell lineage
fibroblast
cell sex
M
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH001896
labexpid
DS18324
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945239: UW_ChipSeq_HFF-Myc_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34165258
Reads aligned (%)
97.1
Duplicates removed (%)
26.2
Number of peaks
26095 (qval < 1E-05)

hg19

Number of total reads
34165258
Reads aligned (%)
96.9
Duplicates removed (%)
26.4
Number of peaks
26041 (qval < 1E-05)

Base call quality data from DBCLS SRA