Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM06990

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM06990

biomaterial_provider

GM06990

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM06990

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000455

labexpid

DS11497

labversion

Bowtie 0.12.5

replicate

1

Sequenced DNA Library

library_name

GSM945237: UW_ChipSeq_GM06990_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

16330752

Reads aligned (%)

96.3

Duplicates removed (%)

1.9

Number of peaks

344 (qval < 1E-05)

hg19

Number of total reads

16330752

Reads aligned (%)

94.2

Duplicates removed (%)

2.8

Number of peaks

722 (qval < 1E-05)