Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
WI-38
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
WI-38
biomaterial_provider
Dr. Carl Mann, SBIGeM
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
WI-38
cell organism
human
cell description
embryonic lung fibroblast cells, hTERT immortalized, includes Raf1 construct
cell karyotype
normal
cell lineage
endoderm
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
4OHTAM_20nM_72hr
treatment description
72 hours with 20 nM 4-hydroxytamoxifen (Stam)
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH002048
labexpid
DS18351
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945223: UW_ChipSeq_WI-38_Input_4OHTAM_20nM_72hr
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
25286938
Reads aligned (%)
98.8
Duplicates removed (%)
1.7
Number of peaks
859 (qval < 1E-05)

hg19

Number of total reads
25286938
Reads aligned (%)
97.9
Duplicates removed (%)
3.1
Number of peaks
974 (qval < 1E-05)

Base call quality data from DBCLS SRA