Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
GM12866
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed.

Attributes by original data submitter

Sample

source_name
GM12866
biomaterial_provider
GM12866
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
GM12866
cell organism
human
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed.
cell karyotype
normal
cell lineage
mesoderm
cell sex
M
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
GM12866/None/Input/std
labexpid
DS18912
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945220: UW_ChipSeq_GM12866_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
44991254
Reads aligned (%)
63.3
Duplicates removed (%)
11.9
Number of peaks
24950 (qval < 1E-05)

hg19

Number of total reads
44991254
Reads aligned (%)
62.8
Duplicates removed (%)
12.5
Number of peaks
25978 (qval < 1E-05)

Base call quality data from DBCLS SRA