ChIP-Atlas: SRX190002

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Epidermis
Cell type: HFF
Tissue: foreskin
Description: foreskin fibroblast

Attributes by original data submitter

Sample

source_name: HFF
biomaterial_provider: Dr. Torok-Storb, FHCRC
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HFF
cell organism: human
cell description: foreskin fibroblast
cell karyotype: normal
cell sex: M
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH002043
labexpid: DS18316
labversion: Bowtie 0.12.7
replicate: 1

Sequenced DNA Library

library_name: GSM945219: UW_ChipSeq_HFF_Input
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 22194407
Reads aligned (%): 98.4
Duplicates removed (%): 2.7
Number of peaks: 898 (qval < 1E-05)

hg19

Number of total reads: 22194407
Reads aligned (%): 97.3
Duplicates removed (%): 4.4
Number of peaks: 1038 (qval < 1E-05)

Base call quality data from DBCLS SRA