Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: RPTEC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX190000
GSM945217: UW ChipSeq RPTEC Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Kidney
Cell type
RPTEC
Tissue
epithelium
Description
renal proximal tubule epithelial cells
Attributes by original data submitter
Sample
source_name
RPTEC
biomaterial_provider
Lonza
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
RPTEC
cell organism
human
cell description
renal proximal tubule epithelial cells
cell karyotype
normal
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH002045
labexpid
DS18336
labversion
Bowtie 0.12.7
replicate
1
Sequenced DNA Library
library_name
GSM945217: UW_ChipSeq_RPTEC_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
36916757
Reads aligned (%)
98.9
Duplicates removed (%)
3.1
Number of peaks
973 (qval < 1E-05)
hg19
Number of total reads
36916757
Reads aligned (%)
97.9
Duplicates removed (%)
4.4
Number of peaks
1122 (qval < 1E-05)
Base call quality data from
DBCLS SRA