SRX189984
GSM945201: UW ChipSeq HeLa-S3 H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000469
labexpid
DS11555
labversion
Bowtie 0.12.5
replicate
1

Sequenced DNA Library

library_name
GSM945201: UW_ChipSeq_HeLa-S3_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45620029
Reads aligned (%)
87.1
Duplicates removed (%)
15.3
Number of peaks
26625 (qval < 1E-05)

hg19

Number of total reads
45620029
Reads aligned (%)
86.6
Duplicates removed (%)
15.9
Number of peaks
26683 (qval < 1E-05)

Base call quality data from DBCLS SRA