SRX189980
GSM945197: UW ChipSeq CD20+ RO01778 Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD20+ B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD20+_RO01778
biomaterial_provider
Rajinder Kaul, UW
donor_id
ENCDO114AAA
biomaterial_type
primary cell
cell_type
B cell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
CD20+_RO01778
cell organism
human
cell description
B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH002170
labexpid
DS18984
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945197: UW_ChipSeq_CD20+_RO01778_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26510296
Reads aligned (%)
97.8
Duplicates removed (%)
4.9
Number of peaks
753 (qval < 1E-05)

hg19

Number of total reads
26510296
Reads aligned (%)
96.8
Duplicates removed (%)
6.3
Number of peaks
949 (qval < 1E-05)

Base call quality data from DBCLS SRA