SRX189969
GSM945186: UW ChipSeq H7-hESC Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H7
NA
NA

Attributes by original data submitter

Sample

source_name
H7-hESC
biomaterial_provider
WiCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
H7-hESC
cell organism
human
cell description
undifferentiated embryonic stem cells
cell lineage
inner cell mass
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000926
labexpid
DS14109
labversion
Bowtie 0.12.5
replicate
1

Sequenced DNA Library

library_name
GSM945186: UW_ChipSeq_H7-hESC_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18390264
Reads aligned (%)
98.5
Duplicates removed (%)
1.6
Number of peaks
504 (qval < 1E-05)

hg19

Number of total reads
18390264
Reads aligned (%)
97.8
Duplicates removed (%)
2.9
Number of peaks
758 (qval < 1E-05)

Base call quality data from DBCLS SRA