Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Epidermis

Cell type

AG10803

Tissue

skin

Description

abdominal skin fibroblasts from apparently heathly 22 year old, "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell

Sample

source_name

AG10803

biomaterial_provider

AG10803

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

AG10803

cell organism

human

cell description

abdominal skin fibroblasts from apparently heathly 22 year old, "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell

cell sex

M

antibody

H3K4me3

antibody antibodydescription

rabbit polyclonal. Antibody Target: H3K4me3

antibody targetdescription

Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

antibody vendorname

Millipore

antibody vendorid

07-473

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000936

labexpid

DS15744

labversion

Bowtie 0.12.7

replicate

1

Sequenced DNA Library

library_name

GSM945172: UW_ChipSeq_AG10803_H3K4me3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

61338258

Reads aligned (%)

98.0

Duplicates removed (%)

26.5

Number of peaks

43909 (qval < 1E-05)

hg19

Number of total reads

61338258

Reads aligned (%)

97.6

Duplicates removed (%)

27.0

Number of peaks

45438 (qval < 1E-05)