Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Epidermis

Cell type

AG10803

Tissue

skin

Description

abdominal skin fibroblasts from apparently heathly 22 year old, "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell

Sample

source_name

AG10803

biomaterial_provider

AG10803

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

AG10803

cell organism

human

cell description

abdominal skin fibroblasts from apparently heathly 22 year old, "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000936

labexpid

DS15911

labversion

Bowtie 0.12.7

replicate

1

Sequenced DNA Library

library_name

GSM945171: UW_ChipSeq_AG10803_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

23903606

Reads aligned (%)

98.3

Duplicates removed (%)

2.1

Number of peaks

724 (qval < 1E-05)

hg19

Number of total reads

23903606

Reads aligned (%)

97.0

Duplicates removed (%)

3.8

Number of peaks

893 (qval < 1E-05)