Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Epidermis

Cell type

AG09309

Tissue

skin

Description

adult toe fibroblast from apparently healthy 21 year old, "7% of the cells examined showing random chromosome loss/gain" -Coriell

Sample

source_name

AG09309

biomaterial_provider

AG09309

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

AG09309

cell organism

human

cell description

adult toe fibroblast from apparently healthy 21 year old, "7% of the cells examined showing random chromosome loss/gain" -Coriell

cell sex

F

antibody

H3K4me3

antibody antibodydescription

rabbit polyclonal. Antibody Target: H3K4me3

antibody targetdescription

Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

antibody vendorname

Millipore

antibody vendorid

07-473

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000932

labexpid

DS16034

labversion

Bowtie 0.12.7

replicate

1

Sequenced DNA Library

library_name

GSM945168: UW_ChipSeq_AG09309_H3K4me3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

50435809

Reads aligned (%)

98.6

Duplicates removed (%)

36.0

Number of peaks

35606 (qval < 1E-05)

hg19

Number of total reads

50435809

Reads aligned (%)

98.4

Duplicates removed (%)

36.2

Number of peaks

37675 (qval < 1E-05)