Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Epidermis

Cell type

AG09309

Tissue

skin

Description

adult toe fibroblast from apparently healthy 21 year old, "7% of the cells examined showing random chromosome loss/gain" -Coriell

Sample

source_name

AG09309

biomaterial_provider

AG09309

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

AG09309

cell organism

human

cell description

adult toe fibroblast from apparently healthy 21 year old, "7% of the cells examined showing random chromosome loss/gain" -Coriell

cell sex

F

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000932

labexpid

DS16030

labversion

Bowtie 0.12.7

replicate

1

Sequenced DNA Library

library_name

GSM945167: UW_ChipSeq_AG09309_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

9730260

Reads aligned (%)

98.3

Duplicates removed (%)

1.0

Number of peaks

340 (qval < 1E-05)

hg19

Number of total reads

9730260

Reads aligned (%)

97.3

Duplicates removed (%)

2.1

Number of peaks

566 (qval < 1E-05)