SRX189949
GSM945166: UW ChipSeq AG09319 H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Others
Cell type
AG09319
Tissue
gingival
Description
gum tissue fibroblasts from apparently heathly 24 year old

Attributes by original data submitter

Sample

source_name
AG09319
biomaterial_provider
AG09319
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
AG09319
cell organism
human
cell description
gum tissue fibroblasts from apparently heathly 24 year old
cell karyotype
normal
cell sex
F
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000934
labexpid
DS15742
labversion
Bowtie 0.12.7
replicate
1

Sequenced DNA Library

library_name
GSM945166: UW_ChipSeq_AG09319_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
54047547
Reads aligned (%)
97.4
Duplicates removed (%)
33.0
Number of peaks
40335 (qval < 1E-05)

hg19

Number of total reads
54047547
Reads aligned (%)
97.2
Duplicates removed (%)
33.3
Number of peaks
41832 (qval < 1E-05)

Base call quality data from DBCLS SRA