SRX189745
GSM1009652: Histone Input 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Primary Human Umbilical Vein Endothelial Cells
cell type
Primary Human Umbilical Vein Endothelial Cells
passages
P3-6
treatment
VEGF
time
4h

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21595531
Reads aligned (%)
98.8
Duplicates removed (%)
8.0
Number of peaks
1375 (qval < 1E-05)

hg19

Number of total reads
21595531
Reads aligned (%)
97.5
Duplicates removed (%)
10.4
Number of peaks
1312 (qval < 1E-05)

Base call quality data from DBCLS SRA