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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: EP300
wikigenes
PDBj
CellType: HUVEC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX189722
GSM1009629: p300 Hour 4 Rep 1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
EP300
Cell type
Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
Primary Human Umbilical Vein Endothelial Cells
cell type
Primary Human Umbilical Vein Endothelial Cells
passages
P3-6
treatment
VEGF
time
4h
chip antibody
p300
chip antibody manufactuer
Santa Cruz
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
15796340
Reads aligned (%)
92.5
Duplicates removed (%)
27.5
Number of peaks
1117 (qval < 1E-05)
hg19
Number of total reads
15796340
Reads aligned (%)
91.6
Duplicates removed (%)
29.1
Number of peaks
1208 (qval < 1E-05)
Base call quality data from
DBCLS SRA