SRX189716
GSM1009623: H3K27ac Hour 0; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Primary Human Umbilical Vein Endothelial Cells
cell type
Primary Human Umbilical Vein Endothelial Cells
passages
P3-6
treatment
VEGF
time
0h
chip antibody
H3K27ac
chip antibody manufactuer
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18551058
Reads aligned (%)
99.5
Duplicates removed (%)
5.5
Number of peaks
44707 (qval < 1E-05)

hg19

Number of total reads
18551058
Reads aligned (%)
99.2
Duplicates removed (%)
5.7
Number of peaks
44607 (qval < 1E-05)

Base call quality data from DBCLS SRA