Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Others

Cell type

Olf neurosphere

Tissue

Nasal biopsy

Description

Human olfactory neurosphere-derived cells from mucosal biopsies

Sample

source_name

Olf_neurosphere

biomaterial_provider

Alan Mackay-Sim

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

labversion

baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

replicate

1,3,2

cell

Olf_neurosphere

cell organism

human

cell description

Human olfactory neurosphere-derived cells from mucosal biopsies

cell karyotype

normal

cell sex

U

labversion

baseAlignCounts.pl v 1

Sequenced DNA Library

library_name

GSM1008584: Duke_DnaseSeq_Olf_neurosphere

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

447418377

Reads aligned (%)

0.8

Duplicates removed (%)

17.5

Number of peaks

11023 (qval < 1E-05)

hg19

Number of total reads

447418377

Reads aligned (%)

0.8

Duplicates removed (%)

18.2

Number of peaks

11002 (qval < 1E-05)