Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Kidney

Cell type

293

Primary Tissue

Kidney

Tissue Diagnosis

Normal

Sample

source_name

HEK293T

biomaterial_provider

Thermo Scientific Open Biosystems

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

labversion

baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

replicate

1,2

cell

HEK293T

cell organism

human

cell description

embryonic kidney that expresses SV40 large T antigen, HEK293 (ATCC number CRL-1573) is the parental cell line

cell lineage

mesoderm

cell sex

F

labversion

baseAlignCounts.pl v 1

Sequenced DNA Library

library_name

GSM1008573: Duke_DnaseSeq_HEK293T

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

305548761

Reads aligned (%)

0.3

Duplicates removed (%)

12.8

Number of peaks

1324 (qval < 1E-05)

hg19

Number of total reads

305548761

Reads aligned (%)

0.3

Duplicates removed (%)

13.4

Number of peaks

1347 (qval < 1E-05)