Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Epidermis

Cell type

FibroP

Tissue

skin

Description

fibroblasts taken from individuals with Parkinson's disease, AG20443, AG08395 and AG08396 were pooled for this sample

Sample

source_name

FibroP_AG20443

biomaterial_provider

Coriell

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

labversion

baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

replicate

1,3,2

cell

FibroP_AG20443

cell organism

human

cell description

fibroblasts taken from individuals with Parkinson's disease

cell sex

M

labversion

baseAlignCounts.pl v 1

Sequenced DNA Library

library_name

GSM1008561: Duke_DnaseSeq_FibroP_AG20443

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

458791550

Reads aligned (%)

0.4

Duplicates removed (%)

20.5

Number of peaks

96 (qval < 1E-05)

hg19

Number of total reads

458791550

Reads aligned (%)

0.4

Duplicates removed (%)

20.8

Number of peaks

108 (qval < 1E-05)