Curated Sample Data


Genome
hg19
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type Class
Blood
Cell type
GM13977

Cell type information


Tissue
blood
Lineage
mesoderm
Description
lymphoblastoid cell line, Clinically affected; microcephaly; low frontal hairline; synophris; "penciled" arched eyebrows; short nose; crescent shaped mouth; hirsutism; micromelia; short thumbs; mental retardation; clinically normal monozygotic twin sister is GM13976

Attributes by Original Data Submitter


source_name
GM13977
biomaterial_provider
Coriell
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
labversion
baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female
replicate
1,2
cell
GM13977
cell organism
human
cell description
lymphoblastoid cell line, Clinically affected; microcephaly; low frontal hairline; synophris; "penciled" arched eyebrows; short nose; crescent shaped mouth; hirsutism; micromelia; short thumbs; mental retardation; clinically normal monozygotic twin sister is GM13976
cell karyotype
affected
cell lineage
mesoderm
cell sex
F
labversion
baseAlignCounts.pl v 1

Metadata from Sequence Read Archive

Library Description


library_name
GSM1008556: Duke_DnaseSeq_GM13977
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
430428126
Reads aligned (%)
0.1
Duplicates removed (%)
17.1
Number of peaks
200 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA