Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP4

Cell type

Cell type Class
Digestive tract
Cell type
SNU-1750
NA
NA

Attributes by original data submitter

Sample

source_name
Colorectal cancer cell line
cell line
SNU175
cell type
Colorectal cancer cell line
genetic modification
none
library strategy
transcription factor ChIP-seq
chip antibody
anti-TFAP4 (Santa Cruz Biotechnology, sc-18593X)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were purified using QIA quick column (DNase I-seq, ATAC-seq, Targeted RNA-/DNA-seq, and 4C-seq), QIA minElute column (ChIP-seq) or SPRI beads (ATAC-seq). Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
50560541
Reads aligned (%)
46.5
Duplicates removed (%)
48.0
Number of peaks
42777 (qval < 1E-05)

hg38

Number of total reads
50560541
Reads aligned (%)
47.5
Duplicates removed (%)
47.2
Number of peaks
42764 (qval < 1E-05)

Base call quality data from DBCLS SRA