SRX189253
GSM981239: Untreated H3K4me3 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
H9 hESC
cell type
Pluripotent hESC
chip antibody
H3K4me3
antibody vendor
Milipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39595351
Reads aligned (%)
96.5
Duplicates removed (%)
6.1
Number of peaks
29518 (qval < 1E-05)

hg19

Number of total reads
39595351
Reads aligned (%)
95.7
Duplicates removed (%)
7.8
Number of peaks
29786 (qval < 1E-05)

Base call quality data from DBCLS SRA