SRX189240
GSM1008620: cMyc ChIPSeq H2171 rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Lung
Cell type
NCI-H2171
Primary Tissue
Lung
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
Small Cell Lung Carcinoma
chip antibody
cMyc
cell line
H2171

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
47120803
Reads aligned (%)
93.8
Duplicates removed (%)
84.0
Number of peaks
13135 (qval < 1E-05)

hg38

Number of total reads
47120803
Reads aligned (%)
94.4
Duplicates removed (%)
82.9
Number of peaks
13149 (qval < 1E-05)

Base call quality data from DBCLS SRA