SRX189236
GSM1008616: WCE H128 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
NCI-H128
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
Small Cell Lung Carcinoma
chip antibody
None
cell line
H128

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30296156
Reads aligned (%)
91.8
Duplicates removed (%)
2.2
Number of peaks
648 (qval < 1E-05)

hg19

Number of total reads
30296156
Reads aligned (%)
91.1
Duplicates removed (%)
3.4
Number of peaks
924 (qval < 1E-05)

Base call quality data from DBCLS SRA