SRX189083
GSM1007997: ChIP seq CTCF A39; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Lung
Cell type
WI-38
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
WI-38 cell culture
cell type
hTERT-immortalized WI-38 primary human lung fibroblasts
cell line
WI-38
antibody
CTCF
antibody manufacturer
Millipore
passage
39

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
19492531
Reads aligned (%)
69.5
Duplicates removed (%)
11.9
Number of peaks
11529 (qval < 1E-05)

hg38

Number of total reads
19492531
Reads aligned (%)
71.4
Duplicates removed (%)
10.3
Number of peaks
11522 (qval < 1E-05)

Base call quality data from DBCLS SRA