Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM10248

Tissue

blood

Lineage

mesoderm

Description

lymphoblastoid cell line, Clinically normal; 4 paternal cousins have Cornelia de Lange syndrome; 46,XY, t(3;22)(q25.3;p12)

Sample

source_name

GM10248

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

controlid

wgEncodeEH003442

labversion

fseq v 1.84

cell

GM10248

cell organism

human

cell description

lymphoblastoid cell line, Clinically normal; 4 paternal cousins have Cornelia de Lange syndrome; 46,XY, t(3;22)(q25.3;p12)

cell karyotype

normal

cell lineage

mesoderm

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

controlid

wgEncodeEH003442

Sequenced DNA Library

library_name

GSM1006895: UT-A_ChipSeq_GM10248_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

9884786

Reads aligned (%)

50.1

Duplicates removed (%)

2.8

Number of peaks

240 (qval < 1E-05)

hg19

Number of total reads

9884786

Reads aligned (%)

49.4

Duplicates removed (%)

3.6

Number of peaks

312 (qval < 1E-05)