Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM10266

Tissue

blood

Lineage

mesoderm

Description

lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation; seizures; 3 cousins are also affected; 46,XY,-22,+der (22)t(3;22)(q25.3;p12)

Sample

source_name

GM10266

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

controlid

wgEncodeEH003447

labversion

fseq v 1.84

cell

GM10266

cell organism

human

cell description

lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation; seizures; 3 cousins are also affected; 46,XY,-22,+der (22)t(3;22)(q25.3;p12)

cell karyotype

affected

cell lineage

mesoderm

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

controlid

wgEncodeEH003447

Sequenced DNA Library

library_name

GSM1006890: UT-A_ChipSeq_GM10266_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

18269422

Reads aligned (%)

51.8

Duplicates removed (%)

4.1

Number of peaks

337 (qval < 1E-05)

hg19

Number of total reads

18269422

Reads aligned (%)

50.9

Duplicates removed (%)

4.8

Number of peaks

537 (qval < 1E-05)