Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM13977

Tissue

blood

Lineage

mesoderm

Description

lymphoblastoid cell line, Clinically affected; microcephaly; low frontal hairline; synophris; "penciled" arched eyebrows; short nose; crescent shaped mouth; hirsutism; micromelia; short thumbs; mental retardation; clinically normal monozygotic twin sister is GM13976

Sample

source_name

GM13977

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

controlid

wgEncodeEH003444

labversion

fseq v 1.84

cell

GM13977

cell organism

human

cell description

lymphoblastoid cell line, Clinically affected; microcephaly; low frontal hairline; synophris; "penciled" arched eyebrows; short nose; crescent shaped mouth; hirsutism; micromelia; short thumbs; mental retardation; clinically normal monozygotic twin sister is GM13976

cell karyotype

affected

cell lineage

mesoderm

cell sex

F

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

controlid

wgEncodeEH003444

Sequenced DNA Library

library_name

GSM1006889: UT-A_ChipSeq_GM13977_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

34933366

Reads aligned (%)

57.8

Duplicates removed (%)

6.1

Number of peaks

651 (qval < 1E-05)

hg19

Number of total reads

34933366

Reads aligned (%)

56.9

Duplicates removed (%)

7.0

Number of peaks

954 (qval < 1E-05)