Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Kidney
Cell type
Kidney
MeSH Description
Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Attributes by original data submitter

Sample

source_name
Kidney_OC
biomaterial_provider
NICHD ; NICHD ; NICHD ; NCTC ; NICHD
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname
Millipore
antibody vendorid
07-729
controlid
wgEncodeEH003451
labversion
baseAlignCounts.pl v 1,fseq v 1.84, iff_Kidney,p-value cutoff: 0.05
replicate
1,3,2
antibody
CTCF
antibody antibodydescription
rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname
Millipore
antibody vendorid
07-729
controlid
wgEncodeEH003451
labversion
baseAlignCounts.pl v 1
replicate
1

Sequenced DNA Library

library_name
GSM1006886: UT-A_ChipSeq_Kidney_OC_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
53537080
Reads aligned (%)
41.1
Duplicates removed (%)
19.3
Number of peaks
36652 (qval < 1E-05)

hg38

Number of total reads
53537080
Reads aligned (%)
41.8
Duplicates removed (%)
18.5
Number of peaks
36808 (qval < 1E-05)

Base call quality data from DBCLS SRA