Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Lung

Cell type

Lung

MeSH Description

Either of the pair of organs occupying the cavity of the thorax that effect the aeration of the blood.

Sample

source_name

Lung_OC

biomaterial_provider

NICHD ; NICHD ; NICHD ; CF Center ; CF Center

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

controlid

wgEncodeEH003453

labversion

fseq v 1.84

cell

Lung_OC

cell organism

human

cell description

Primary frozen lung tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase) and CF Center donor IDs DD006I (Rep B1 FAIRE) and DD007I (Rep B2 FAIRE)

cell karyotype

normal

cell sex

B

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

controlid

wgEncodeEH003453

Sequenced DNA Library

library_name

GSM1006880: UT-A_ChipSeq_Lung_OC_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

14049362

Reads aligned (%)

40.1

Duplicates removed (%)

2.7

Number of peaks

75 (qval < 1E-05)

hg19

Number of total reads

14049362

Reads aligned (%)

39.7

Duplicates removed (%)

3.2

Number of peaks

238 (qval < 1E-05)