Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
controlid
wgEncodeEH003452
labversion
fseq v 1.84
cell
LNCaP
cell organism
human
cell description
prostate adenocarcinoma, "LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma." - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.)
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEH003452

Sequenced DNA Library

library_name
GSM1006879: UT-A_ChipSeq_LNCaP_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
20363246
Reads aligned (%)
39.2
Duplicates removed (%)
6.4
Number of peaks
111 (qval < 1E-05)

hg19

Number of total reads
20363246
Reads aligned (%)
38.8
Duplicates removed (%)
7.1
Number of peaks
125 (qval < 1E-05)

Base call quality data from DBCLS SRA