Antigen

Antigen Class

TFs and others

Antigen

MYC

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

MCF-7

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC

antibody targetdescription

transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-764

controlid

wgEncodeEH000589

labversion

baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05

replicate

1,2

cell sex

F

treatment

serum_stimulated_media

treatment description

Grown with normal serum levels (10%), then switched back to normal serum levels (10% FBS) for 3 hours.

antibody

c-Myc

antibody antibodydescription

rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

antibody targetdescription

transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-764

controlid

wgEncodeEH000589

labversion

baseAlignCounts.pl v 1

Sequenced DNA Library

library_name

GSM1006877: UT-A_ChipSeq_MCF-7_serum_stimulated_media_c-Myc

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg19

Number of total reads

105478000

Reads aligned (%)

53.7

Duplicates removed (%)

42.1

Number of peaks

94607 (qval < 1E-05)

hg38

Number of total reads

105478000

Reads aligned (%)

54.1

Duplicates removed (%)

41.8

Number of peaks

91510 (qval < 1E-05)