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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: MYC
wikigenes
PDBj
CellType: MCF-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX188954
GSM1006877: UT-A ChipSeq MCF-7 serum stimulated media c-Myc
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
MYC
Cell type
Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
MCF-7
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-764
controlid
wgEncodeEH000589
labversion
baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05
replicate
1,2
cell sex
F
treatment
serum_stimulated_media
treatment description
Grown with normal serum levels (10%), then switched back to normal serum levels (10% FBS) for 3 hours.
antibody
c-Myc
antibody antibodydescription
rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-764
controlid
wgEncodeEH000589
labversion
baseAlignCounts.pl v 1
Sequenced DNA Library
library_name
GSM1006877: UT-A_ChipSeq_MCF-7_serum_stimulated_media_c-Myc
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
105478000
Reads aligned (%)
53.7
Duplicates removed (%)
42.1
Number of peaks
94607 (qval < 1E-05)
hg38
Number of total reads
105478000
Reads aligned (%)
54.1
Duplicates removed (%)
41.8
Number of peaks
91510 (qval < 1E-05)
Base call quality data from
DBCLS SRA