Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
GM20000
Tissue
blood
Lineage
mesoderm
Description
lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation

Attributes by original data submitter

Sample

source_name
GM20000
biomaterial_provider
Coriell
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname
Millipore
antibody vendorid
07-729
controlid
wgEncodeEH003449
labversion
baseAlignCounts.pl v 1,fseq v 1.84, iff_20000,p-value cutoff: 0.05
replicate
1,2
cell sex
M
antibody
CTCF
antibody antibodydescription
rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname
Millipore
antibody vendorid
07-729
controlid
wgEncodeEH003449
labversion
baseAlignCounts.pl v 1
replicate
1

Sequenced DNA Library

library_name
GSM1006873: UT-A_ChipSeq_GM20000_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
24548982
Reads aligned (%)
71.5
Duplicates removed (%)
12.7
Number of peaks
26696 (qval < 1E-05)

hg38

Number of total reads
24548982
Reads aligned (%)
73.2
Duplicates removed (%)
11.4
Number of peaks
25995 (qval < 1E-05)

Base call quality data from DBCLS SRA