Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
Spleen_OC
biomaterial_provider
NICHD
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
controlid
wgEncodeEH003455
labversion
fseq v 1.84
cell
Spleen_OC
cell organism
human
cell description
Primary frozen spleen tissue from NICHD donor IDs 1863 (Rep B1) and 4548 (Rep B2)
cell karyotype
normal
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEH003455

Sequenced DNA Library

library_name
GSM1006872: UT-A_ChipSeq_Spleen_OC_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
31198628
Reads aligned (%)
42.4
Duplicates removed (%)
3.9
Number of peaks
393 (qval < 1E-05)

hg19

Number of total reads
31198628
Reads aligned (%)
41.8
Duplicates removed (%)
4.3
Number of peaks
457 (qval < 1E-05)

Base call quality data from DBCLS SRA