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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Spleen
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX188949
GSM1006872: UT-A ChipSeq Spleen OC Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Others
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.
Attributes by original data submitter
Sample
source_name
Spleen_OC
biomaterial_provider
NICHD
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
controlid
wgEncodeEH003455
labversion
fseq v 1.84
cell
Spleen_OC
cell organism
human
cell description
Primary frozen spleen tissue from NICHD donor IDs 1863 (Rep B1) and 4548 (Rep B2)
cell karyotype
normal
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEH003455
Sequenced DNA Library
library_name
GSM1006872: UT-A_ChipSeq_Spleen_OC_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
31198628
Reads aligned (%)
42.4
Duplicates removed (%)
3.9
Number of peaks
393 (qval < 1E-05)
hg19
Number of total reads
31198628
Reads aligned (%)
41.8
Duplicates removed (%)
4.3
Number of peaks
457 (qval < 1E-05)
Base call quality data from
DBCLS SRA