Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Pancreas

Cell type

Pancreas

MeSH Description

A nodular organ in the ABDOMEN that contains a mixture of ENDOCRINE GLANDS and EXOCRINE GLANDS. The small endocrine portion consists of the ISLETS OF LANGERHANS secreting a number of hormones into the blood stream. The large exocrine portion (EXOCRINE PANCREAS) is a compound acinar gland that secretes several digestive enzymes into the pancreatic ductal system that empties into the DUODENUM.

Sample

source_name

Pancreas_OC

biomaterial_provider

NCTC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

controlid

wgEncodeEH003454

labversion

fseq v 1.84

cell

Pancreas_OC

cell organism

human

cell description

Primary frozen pancreas tissue from NCTC donor IDs 09-0144A (Rep B1) and 10-0021A (Rep B2)

cell karyotype

normal

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

controlid

wgEncodeEH003454

Sequenced DNA Library

library_name

GSM1006871: UT-A_ChipSeq_Pancreas_OC_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

29440758

Reads aligned (%)

54.9

Duplicates removed (%)

8.0

Number of peaks

533 (qval < 1E-05)

hg19

Number of total reads

29440758

Reads aligned (%)

54.4

Duplicates removed (%)

8.8

Number of peaks

649 (qval < 1E-05)