SRX188943
GSM1006866: UT-A ChipSeq MCF-7 serum starved media c-Myc

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-764
controlid
wgEncodeEH000589
labversion
baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05
replicate
1,2
cell sex
F
treatment
serum_starved_media
treatment description
Grown with normal serum levels (10%), then switched to media containing low level of FBS (0.05%) for 72 hours
antibody
c-Myc
antibody antibodydescription
rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-764
controlid
wgEncodeEH000589
labversion
baseAlignCounts.pl v 1

Sequenced DNA Library

library_name
GSM1006866: UT-A_ChipSeq_MCF-7_serum_starved_media_c-Myc
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
75694807
Reads aligned (%)
96.5
Duplicates removed (%)
18.0
Number of peaks
98767 (qval < 1E-05)

hg19

Number of total reads
75694807
Reads aligned (%)
96.2
Duplicates removed (%)
18.3
Number of peaks
98935 (qval < 1E-05)

Base call quality data from DBCLS SRA