SRX188843
GSM1006722: 48hr H3K4me3 ChipSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
Chromatin IP against 48hr_H3K4me3
cell type
H1 embryonic stem cells
chip antibody
H3K4me3
antibody catalog number
Millipore 07-473
drug treatment
Activin
drug concentration
50ng/ml
duration of treatment
48hr

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21573882
Reads aligned (%)
85.8
Duplicates removed (%)
19.1
Number of peaks
31981 (qval < 1E-05)

hg19

Number of total reads
21573882
Reads aligned (%)
85.7
Duplicates removed (%)
19.2
Number of peaks
31818 (qval < 1E-05)

Base call quality data from DBCLS SRA