Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata1

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
GATA-1
antibody antibodydescription
Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1
antibody targetdescription
GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells.
antibody vendorname
Donated by Dr. E.H. Bresnick, UW Madison
antibody vendorid
GATA-1
treatment
DMSO_2.0pct
treatment description
5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)
control
std
control description
Standard input signal for most experiments.
age
immortalized
age description
Immortal cells
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002791
labversion
PeakSeq1.0
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM1003808: Stanford_ChipSeq_MEL_GATA-1_DMSO_2.0pct_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
45707381
Reads aligned (%)
94.4
Duplicates removed (%)
15.7
Number of peaks
31384 (qval < 1E-05)

mm9

Number of total reads
45707381
Reads aligned (%)
94.2
Duplicates removed (%)
15.8
Number of peaks
31385 (qval < 1E-05)

Base call quality data from DBCLS SRA