Antigen

Antigen Class

TFs and others

Antigen

Bhlhe40

Cell type

Cell type Class

Blood

Cell type

MEL

Tissue

Blood

Lineage

cellLine

Description

Leukemia (K562 analog)

Sample

source_name

MEL

biomaterial_provider

Weissman lab

lab

Stanford-m

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

MEL

cell organism

mouse

cell description

Leukemia (K562 analog)

cell sex

M

antibody

BHLHE40_(NB100-1800)

antibody antibodydescription

Rabbit polyclonal, maps to a region between residues 350 and the C-terminus (residue 412). Antibody Target: BHLHE40

antibody targetdescription

This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differentiation.

antibody vendorname

Novus

antibody vendorid

NB100-1800

treatment

None

treatment description

No special treatment or protocol applies

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

age

immortalized

age description

Immortal cells

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEM001947

labversion

PeakSeq1.0

strain

Unknown

strain description

Unknown strain origin

Sequenced DNA Library

library_name

GSM1003794: Stanford_ChipSeq_MEL_BHLHE40_(NB100-1800)_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

58886558

Reads aligned (%)

92.4

Duplicates removed (%)

22.3

Number of peaks

27650 (qval < 1E-05)

mm9

Number of total reads

58886558

Reads aligned (%)

92.2

Duplicates removed (%)

22.3

Number of peaks

27656 (qval < 1E-05)