Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Zc3h11a

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

source_name
CH12
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
CH12
cell organism
mouse
cell description
B-cell lymphoma (GM12878 analog)
cell sex
F
antibody
ZC3H11A_(NB100-74650)
antibody antibodydescription
Rabbit polyclonal antibody. The immunogen recognized by this antibody maps to a region between residue 250 and 300 of human zinc finger CCCH-type containing 11A.
antibody targetdescription
ZC3H11A is a C3H1-type zinc finger protein. ZC3H11A has been identified as a protein that is phosphorylated upon DNA damage by ATM or ATR. The function of ZC3H11A remains uncharacterized.
antibody vendorname
NovusBio
antibody vendorid
NB100-74650
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEM001939
strain
B10.H-2aH-4bp/Wts
strain description
Derived by inbreeding from selected F2 progeny of B10.A X B10.129

Sequenced DNA Library

library_name
GSM1003792: Stanford_ChipSeq_CH12_ZC3H11A_(NB100-74650)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
59045006
Reads aligned (%)
95.2
Duplicates removed (%)
17.0
Number of peaks
23960 (qval < 1E-05)

mm9

Number of total reads
59045006
Reads aligned (%)
95.0
Duplicates removed (%)
17.0
Number of peaks
23941 (qval < 1E-05)

Base call quality data from DBCLS SRA