Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rcor2

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
COREST_(sc-30189)
antibody antibodydescription
Rabbit polyclonal, epitope corresponding to amino acids 246-310 mapping within an internal region of CoREST of human origin recommended for detection of CoREST of mouse, rat and human origin. Antibody Target: COREST (sc30189)
antibody targetdescription
Essential component of the BHC complex, a corepressor complex that represses transcription of neuron-specific genes in non-neuronal cells. In the BHC complex, it serves as a molecular beacon for the recruitment of molecular machinery, including MeCP2 and SUV39H1, that imposes silencing across a chromosomal interval. Plays a central role in demethylation of Lys-4 of histone H3 by promoting demethylase activity of KDM1A on core histones and nucleosomal substrates.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-30189
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEM001947
labversion
PeakSeq1.0
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM1003789: Stanford_ChipSeq_MEL_COREST_(sc-30189)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
54237237
Reads aligned (%)
95.1
Duplicates removed (%)
16.9
Number of peaks
39915 (qval < 1E-05)

mm9

Number of total reads
54237237
Reads aligned (%)
94.9
Duplicates removed (%)
16.9
Number of peaks
39827 (qval < 1E-05)

Base call quality data from DBCLS SRA