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BigWig
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BigWig
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: MEL
ATCC
MeSH
RIKEN BRC
SRX188807
GSM1003787: Stanford ChipSeq MEL Input DMSO 2.0pct IgG-rat
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)
Attributes by original data submitter
Sample
source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
DMSO_2.0pct
treatment description
5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)
control
IgG-rat
control description
Input signal from Normal Rat IgG ChIP-seq
age
immortalized
age description
Immortal cells
control
IgG-rat
control description
Input signal from Normal Rat IgG ChIP-seq
controlid
wgEncodeEM002782
replicate
1
strain
Unknown
strain description
Unknown strain origin
Sequenced DNA Library
library_name
GSM1003787: Stanford_ChipSeq_MEL_Input_DMSO_2.0pct_IgG-rat
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
55901333
Reads aligned (%)
94.2
Duplicates removed (%)
15.8
Number of peaks
714 (qval < 1E-05)
mm9
Number of total reads
55901333
Reads aligned (%)
94.0
Duplicates removed (%)
15.9
Number of peaks
816 (qval < 1E-05)
Base call quality data from
DBCLS SRA