Antigen

Antigen Class

TFs and others

Antigen

Usf2

Cell type

Cell type Class

Blood

Cell type

MEL

Tissue

Blood

Lineage

cellLine

Description

Leukemia (K562 analog)

Sample

source_name

MEL

biomaterial_provider

Weissman lab

lab

Stanford-m

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

MEL

cell organism

mouse

cell description

Leukemia (K562 analog)

cell sex

M

antibody

USF2

antibody antibodydescription

Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2

antibody targetdescription

Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').

antibody vendorname

abcam

antibody vendorid

ab60931

treatment

None

treatment description

No special treatment or protocol applies

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

age

immortalized

age description

Immortal cells

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEM001947

labversion

PeakSeq1.0

strain

Unknown

strain description

Unknown strain origin

Sequenced DNA Library

library_name

GSM1003785: Stanford_ChipSeq_MEL_USF2_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

58402090

Reads aligned (%)

94.9

Duplicates removed (%)

20.2

Number of peaks

5025 (qval < 1E-05)

mm9

Number of total reads

58402090

Reads aligned (%)

94.8

Duplicates removed (%)

20.2

Number of peaks

5067 (qval < 1E-05)