Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Zkscan1

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
ZKSCAN1_(HPA006672)
antibody antibodydescription
Rabbit polyclonal, Immunogen: Zinc finger with KRAB and SCAN domain-containing protein 1 recombinant protein epitope signature tag (PrEST). Antibody Target: ZKSCAN1
antibody targetdescription
The ZKSCAN1 gene encodes a transcriptional regulator of the KRAB (Kruppel-associated box) subfamily of zinc finger proteins, which contain repeated Cys2-His2 (C2H2) zinc finger domains that are connected by conserved sequences, called H/C links. Transcriptional regulatory proteins containing tandemly repeated zinc finger domains are thought to be involved in both normal and abnormal cellular proliferation and differentiation.
antibody vendorname
Sigma-Aldrich
antibody vendorid
HPA006672
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEM001947
labversion
PeakSeq1.0
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM1003779: Stanford_ChipSeq_MEL_ZKSCAN1_(HPA006672)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
55380421
Reads aligned (%)
90.7
Duplicates removed (%)
23.8
Number of peaks
8180 (qval < 1E-05)

mm9

Number of total reads
55380421
Reads aligned (%)
90.5
Duplicates removed (%)
23.8
Number of peaks
8406 (qval < 1E-05)

Base call quality data from DBCLS SRA