Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hcfc1

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
HCFC1_(NB100-68209)
antibody antibodydescription
Rabbit polyclonalantibody against residue 1700 and 1750 of human host cell factor C1
antibody targetdescription
The epitope recognized by this antibody maps to a region between residue 1700 and 1750 of human host cell factor C1 (VP16-accessory protein).
antibody vendorname
NovusBio
antibody vendorid
NB100-68209
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEM001947
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM1003778: Stanford_ChipSeq_MEL_HCFC1_(NB100-68209)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
49718558
Reads aligned (%)
94.7
Duplicates removed (%)
27.4
Number of peaks
31582 (qval < 1E-05)

mm9

Number of total reads
49718558
Reads aligned (%)
94.3
Duplicates removed (%)
27.3
Number of peaks
31646 (qval < 1E-05)

Base call quality data from DBCLS SRA