Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Zc3h11a

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
ZC3H11A_(NB100-74650)
antibody antibodydescription
Rabbit polyclonal antibody. The immunogen recognized by this antibody maps to a region between residue 250 and 300 of human zinc finger CCCH-type containing 11A.
antibody targetdescription
ZC3H11A is a C3H1-type zinc finger protein. ZC3H11A has been identified as a protein that is phosphorylated upon DNA damage by ATM or ATR. The function of ZC3H11A remains uncharacterized.
antibody vendorname
NovusBio
antibody vendorid
NB100-74650
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEM001947
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM1003776: Stanford_ChipSeq_MEL_ZC3H11A_(NB100-74650)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
54347292
Reads aligned (%)
91.2
Duplicates removed (%)
16.6
Number of peaks
26047 (qval < 1E-05)

mm9

Number of total reads
54347292
Reads aligned (%)
91.0
Duplicates removed (%)
16.6
Number of peaks
26089 (qval < 1E-05)

Base call quality data from DBCLS SRA