Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

CD4+ T cells

NA

NA

Sample

source_name

THelper-Activated

biomaterial_provider

Stam lab

lab

UW-m

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

THelper-Activated

cell organism

mouse

cell description

Activated primary CD4 effector cells, isolated ex vivo

cell sex

M

age

adult-8wks

age description

Adult 8 weeks

age

adult-8wks

age description

Adult 8 weeks

labexpid

DS17070

labversion

Hotspot-v5.2

replicate

1

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM1003833: UW_DnaseDgf_THelper-Activated_adult-8wks

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

274076701

Reads aligned (%)

92.7

Duplicates removed (%)

57.1

Number of peaks

63663 (qval < 1E-05)

mm9

Number of total reads

274076701

Reads aligned (%)

92.5

Duplicates removed (%)

57.1

Number of peaks

63675 (qval < 1E-05)