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BigWig
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BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: Thymus
ATCC
MeSH
RIKEN BRC
SRX188654
GSM1003827: UW DnaseDgf Thymus adult-8wks
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Blood
Cell type
Thymus
NA
NA
Attributes by original data submitter
Sample
source_name
Thymus
biomaterial_provider
1)LICR lab; 2)CSHL lab
lab
UW-m
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
Thymus
cell organism
mouse
cell description
Thymus
cell sex
M
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
labexpid
DS18819
labversion
Hotspot-v5.2
replicate
1
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse
Sequenced DNA Library
library_name
GSM1003827: UW_DnaseDgf_Thymus_adult-8wks
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
414478566
Reads aligned (%)
92.6
Duplicates removed (%)
37.8
Number of peaks
77402 (qval < 1E-05)
mm9
Number of total reads
414478566
Reads aligned (%)
92.5
Duplicates removed (%)
37.7
Number of peaks
77501 (qval < 1E-05)
Base call quality data from
DBCLS SRA